AMRI Publications by Year

2022

• ES Beck, J Maranzano, NJ Luciano, P Parvathaneni, S Filippini, M Morrison, DJ Suto, T Wu, P van Gelderen, JA de Zwart, S Antel, D Fetco, J Ohayon, F Andrada, Y Mina, C Thomas, S Jacobson, J Duyn, I Cortese, S Narayanan, G Nair, P Sati, DS Reich
  Cortical lesion hotspots and association of subpial lesions with disability in multiple sclerosis.
  Mult Scler 2022 :13524585211069167
• D Picchioni, PS Özbay, H Mandelkow, JA de Zwart, Y Wang, P van Gelderen, JH Duyn
  Autonomic arousals contribute to brain fluid pulsations during sleep.
  Neuroimage 2022 249:118888

2021

• J Liu, ES Beck, S Filippini, P van Gelderen, JA de Zwart, G Norato, P Sati, O Al-Louzi, H Kolb, M Donadieu, M Morrison, JH Duyn, DS Reich
  Navigator-Guided Motion and B0 Correction of T2*-Weighted Magnetic Resonance Imaging Improves Multiple Sclerosis Cortical Lesion Detection.
  Invest Radiol 2021 56:409-416
• JA de Zwart, P van Gelderen, JH Duyn
  Sensitivity limitations of high-resolution perfusion-based human fMRI at 7 Tesla.
  Magn Reson Imaging 2021 84:135-144
• Y Wang, P van Gelderen, JA de Zwart, AE Campbell-Washburn, JH Duyn
  FMRI based on transition-band balanced SSFP in comparison with EPI on a high-performance 0.55 T scanner.
  Magn Reson Med 2021 85:3196-3210
• SE Goodale, N Ahmed, C Zhao, JA de Zwart, PS Özbay, D Picchioni, J Duyn, DJ Englot, VL Morgan, C Chang
  fMRI-based detection of alertness predicts behavioral response variability.
  Elife 2021 10:

2020

• J Liu, P van Gelderen, JA de Zwart, JH Duyn
  Reducing motion sensitivity in 3D high-resolution T₂*-weighted MRI by navigator-based motion and nonlinear magnetic field correction.
  Neuroimage 2020 206:116332
• JH Duyn, PS Ozbay, C Chang, D Picchioni
  Physiological changes in sleep that affect fMRI inference.
  Curr Opin Behav Sci 2020 33:42-50
• P van Gelderen, JH Duyn
  Background suppressed magnetization transfer MRI.
  Magn Reson Med 2020 83:883-891
• Y Wang, P van Gelderen, JA de Zwart, JH Duyn
  B₀-field dependence of MRI T₁ relaxation in human brain.
  Neuroimage 2020 213:116700

2019

• P van Gelderen, JH Duyn
  White matter intercompartmental water exchange rates determined from detailed modeling of the myelin sheath.
  Magn Reson Med 2019 81:628-638
• TM Moehlman, JA de Zwart, MG Chappel-Farley, X Liu, IB McClain, C Chang, H Mandelkow, PS Özbay, NL Johnson, RE Bieber, KA Fernandez, KA King, CK Zalewski, CC Brewer, P van Gelderen, JH Duyn, D Picchioni
  All-night functional magnetic resonance imaging sleep studies.
  J Neurosci Methods 2019 316:83-98
• PS $Ouml;zbay, C Chang, D Picchioni, H Mandelkow, MG Chappel-Farley, P van Gelderen, JA de Zwart, J Duyn
  Sympathetic activity contributes to the fMRI signal.
  Commun Biol 2019 2:421

2018

• PS Özbay, C Chang, D Picchioni, H Mandelkow, TM Moehlman, MG Chappel-Farley, P van Gelderen, JA de Zwart, JH Duyn
  Contribution of systemic vascular effects to fMRI activity in white matter.
  Neuroimage 2018 176:541-549
• X Liu, JA de Zwart, ML Schölvinck, C Chang, FQ Ye, DA Leopold, JH Duyn
  Subcortical evidence for a contribution of arousal to fMRI studies of brain activity.
  Nat Commun 2018 9:395
• JA de Zwart, P van Gelderen, MK Schindler, P Sati, J Liu, DS Reich, JH Duyn
  Impulse response timing differences in BOLD and CBV weighted fMRI.
  Neuroimage 2018 181:292-300
• J Liu, JA de Zwart, P van Gelderen, J Murphy-Boesch, JH Duyn
  Effect of head motion on MRI B₀ field distribution.
  Magn Reson Med 2018 80:2538-2548
• N Gudino, JA de Zwart, Q Duan, SJ Dodd, J Murphy-Boesch, P van Gelderen, JH Duyn
  Optically controlled on-coil amplifier with RF monitoring feedback.
  Magn Reson Med 2018 79:2833-2841
• J Turchi, C Chang, FQ Ye, BE Russ, DK Yu, CR Cortes, IE Monosov, JH Duyn, DA Leopold
  The Basal Forebrain Regulates Global Resting-State fMRI Fluctuations.
  Neuron 2018 97:940-952.e4
• JH Duyn
  Studying brain microstructure with magnetic susceptibility contrast at high-field.
  Neuroimage 2018 168:152-161
• D Picchioni, KC Schmidt, KK McWhirter, I Loutaev, AJ Pavletic, AM Speer, AJ Zametkin, N Miao, S Bishu, KM Turetsky, AS Morrow, JL Nadel, BC Evans, DM Vesselinovitch, CA Sheeler, TJ Balkin, CB Smith
  Rates of cerebral protein synthesis in primary visual cortex during sleep-dependent memory consolidation, a study in human subjects.
  Sleep 2018 41:

2017

• X Jiang, P van Gelderen, JH Duyn
  Spectral characteristics of semisolid protons in human brain white matter at 7 T.
  Magn Reson Med 2017 78:1950-1958
• P van Gelderen, X Jiang, JH Duyn
  Rapid measurement of brain macromolecular proton fraction with transient saturation transfer MRI.
  Magn Reson Med 2017 77:2174-2185
• H Mandelkow, JA de Zwart, JH Duyn
  Effects of spatial fMRI resolution on the classification of naturalistic movies.
  Neuroimage 2017 162:45-55
• K Shmueli, SJ Dodd, P van Gelderen, JH Duyn
  Investigating lipids as a source of chemical exchange-induced MRI frequency shifts.
  NMR Biomed 2017 30:
• JH Duyn, J Schenck
  Contributions to magnetic susceptibility of brain tissue.
  NMR Biomed 2017 30:

2016

• P van Gelderen, X Jiang, JH Duyn
  Rapid measurement of brain macromolecular proton fraction with transient saturation transfer MRI.
  Magn Reson Med 2017 77:2174-2185
• H Mandelkow, JA de Zwart, JH Duyn
  Linear Discriminant Analysis Achieves High Classification Accuracy for the BOLD fMRI Response to Naturalistic Movie Stimuli.
  Front Hum Neurosci 2016 10:128
• C Chang, DA Leopold, ML Scholvinck, H Mandelkow, D Picchioni, X Liu, FQ Ye, JN Turchi, JH Duyn
  Tracking brain arousal fluctuations with fMRI.
  Proc Natl Acad Sci U S A 2016 113:4518-23
• C Chang, EP Raven, JH Duyn
  Brain-heart interactions: challenges and opportunities with functional magnetic resonance imaging at ultra-high field.
  Philos Trans A Math Phys Eng Sci 2016 374:20150188
• P van Gelderen, X Jiang, JH Duyn
  Effects of magnetization transfer on T1 contrast in human brain white matter.
  Neuroimage 2016 128:85-95
• N Gudino, Q Duan, JA de Zwart, J Murphy-Boesch, SJ Dodd, H Merkle, P van Gelderen, JH Duyn
  Optically controlled switch-mode current-source amplifiers for on-coil implementation in high-field parallel transmission.
  Magn Reson Med 2016 76:340-9
• RM Saré, M Levine, C Hildreth, D Picchioni, CB Smith
  Chronic sleep restriction during development can lead to long-lasting behavioral effects.
  Physiol Behav 2016 155:208-17

2015

• X Li, P van Gelderen, P Sati, JA de Zwart, DS Reich, JH Duyn
  Detection of demyelination in multiple sclerosis by analysis of [Formula: see text] relaxation at 7 T.
  Neuroimage Clin 2015 7:709-14
• Q Duan, G Nair, N Gudino, JA de Zwart, P van Gelderen, J Murphy-Boesch, DS Reich, JH Duyn, H Merkle
  A 7T spine array based on electric dipole transmitters.
  Magn Reson Med 2015 74:1189-97
• X Liu, T Yanagawa, DA Leopold, C Chang, H Ishida, N Fujii, JH Duyn
  Arousal transitions in sleep, wakefulness, and anesthesia are characterized by an orderly sequence of cortical events.
  Neuroimage 2015 116:222-31
• P van Gelderen, H Mandelkow, JA de Zwart, JH Duyn
  A torque balance measurement of anisotropy of the magnetic susceptibility in white matter.
  Magn Reson Med 2015 74:1388-96
• X Liu, T Yanagawa, DA Leopold, N Fujii, JH Duyn
  Robust Long-Range Coordination of Spontaneous Neural Activity in Waking, Sleep and Anesthesia.
  Cereb Cortex 2015 25:2929-38

2014

• B Yao, S Hametner, P van Gelderen, H Merkle, C Chen, H Lassmann, JH Duyn, F Bagnato
  7 Tesla magnetic resonance imaging to detect cortical pathology in multiple sclerosis.
  PLoS One 2014 9:e108863
• Q Duan, JH Duyn, N Gudino, JA de Zwart, P van Gelderen, DK Sodickson, R Brown
  Characterization of a dielectric phantom for high-field magnetic resonance imaging applications.
  Med Phys 2014 41:102303
• RJ Ward, FA Zucca, JH Duyn, RR Crichton, L Zecca
  The role of iron in brain ageing and neurodegenerative disorders.
  Lancet Neurol 2014 13:1045-60
• X Liu, T Yanagawa, DA Leopold, N Fujii, JH Duyn
  Robust Long-Range Coordination of Spontaneous Neural Activity in Waking, Sleep and Anesthesia.
  Cereb Cortex 2015 25:2929-38
• JH Duyn, TM Barbara
  Sphere of Lorentz and demagnetization factors in white matter.
  Magn Reson Med 2014 72:1-3
• JH Duyn
  Frequency shifts in the myelin water compartment.
  Magn Reson Med 2014 71:1953-5
• D Picchioni, ML Pixa, M Fukunaga, WS Carr, SG Horovitz, AR Braun, JH Duyn
  Decreased connectivity between the thalamus and the neocortex during human nonrapid eye movement sleep.
  Sleep 2014 37:387-97
• MG Bright, M Bianciardi, JA de Zwart, K Murphy, JH Duyn
  Early anti-correlated BOLD signal changes of physiologic origin.
  Neuroimage 2014 87:287-96
• M Bianciardi, P van Gelderen, JH Duyn
  Investigation of BOLD fMRI resonance frequency shifts and quantitative susceptibility changes at 7 T.
  Hum Brain Mapp 2014 35:2191-205
• Z Liu, JA de Zwart, C Chang, Q Duan, P van Gelderen, JH Duyn
  Neuroelectrical decomposition of spontaneous brain activity measured with functional magnetic resonance imaging.
  Cereb Cortex 2014 24:3080-9

2013

• MG Bright, M Bianciardi, JA de Zwart, K Murphy, JH Duyn
  Early anti-correlated BOLD signal changes of physiologic origin.
  Neuroimage 2013 87C:287-296
• VN Ikonomidou, ND Richert, A Vortmeyer, F Tovar-Moll, B Bielekova, NE Cook, JH Duyn, F Bagnato
  Evolution of tumefactive lesions in multiple sclerosis: a 12-year study with serial imaging in a single patient.
  Mult Scler 2013 19:1539-43
• M Bianciardi, P van Gelderen, JH Duyn
  Investigation of BOLD fMRI resonance frequency shifts and quantitative susceptibility changes at 7 T.
  Hum Brain Mapp 2013
• Z Liu, JA de Zwart, C Chang, Q Duan, P van Gelderen, JH Duyn
  Neuroelectrical Decomposition of Spontaneous Brain Activity Measured with Functional Magnetic Resonance Imaging.
  Cereb Cortex 2013
• HM Chow, SG Horovitz, WS Carr, D Picchioni, N Coddington, M Fukunaga, Y Xu, TJ Balkin, JH Duyn, AR Braun
  Rhythmic alternating patterns of brain activity distinguish rapid eye movement sleep from other states of consciousness.
  Proc Natl Acad Sci U S A 2013 110:10300-5
• D Picchioni, JH Duyn, SG Horovitz
  Sleep and the functional connectome.
  Neuroimage 2013 80:387-96
• RM Hutchison, T Womelsdorf, EA Allen, PA Bandettini, VD Calhoun, M Corbetta, S Della Penna, JH Duyn, GH Glover, J Gonzalez-Castillo, DA Handwerker, S Keilholz, V Kiviniemi, DA Leopold, F de Pasquale, O Sporns, M Walter, C Chang
  Dynamic functional connectivity: promise, issues, and interpretations.
  Neuroimage 2013 80:360-78
• JA de Zwart, P van Gelderen, Z Liu, JH Duyn
  Independent sources of spontaneous BOLD fluctuation along the visual pathway.
  Brain Topogr 2013 26:525-37
• P Sati, P van Gelderen, AC Silva, DS Reich, H Merkle, JA de Zwart, JH Duyn
  Micro-compartment specific T2* relaxation in the brain.
  Neuroimage 2013 77:268-78
• JM Jansma, JA de Zwart, P van Gelderen, JH Duyn, WC Drevets, ML Furey
  In vivo evaluation of the effect of stimulus distribution on FIR statistical efficiency in event-related fMRI.
  J Neurosci Methods 2013 215:190-5
• X Liu, JH Duyn
  Time-varying functional network information extracted from brief instances of spontaneous brain activity.
  Proc Natl Acad Sci U S A 2013 110:4392-7
• C Chang, Z Liu, MC Chen, X Liu, JH Duyn
  EEG correlates of time-varying BOLD functional connectivity.
  Neuroimage 2013 72:227-36
• Q Duan, P van Gelderen, J Duyn
  Improved Bloch-Siegert based B1 mapping by reducing off-resonance shift.
  NMR Biomed 2013 26:1070-8
• C Chang, CD Metzger, GH Glover, JH Duyn, HJ Heinze, M Walter
  Association between heart rate variability and fluctuations in resting-state functional connectivity.
  Neuroimage 2013 68:93-104

2012

• Z Liu, JA de Zwart, B Yao, P van Gelderen, LW Kuo, JH Duyn
  Finding thalamic BOLD correlates to posterior alpha EEG.
  Neuroimage 2012 63:1060-9
• JH Duyn
  EEG-fMRI Methods for the Study of Brain Networks during Sleep.
  Front Neurol 2012 3:100
• JY Kwan, SY Jeong, P Van Gelderen, HX Deng, MM Quezado, LE Danielian, JA Butman, L Chen, E Bayat, J Russell, T Siddique, JH Duyn, TA Rouault, MK Floeter
  Iron accumulation in deep cortical layers accounts for MRI signal abnormalities in ALS: correlating 7 tesla MRI and pathology.
  PLoS One 2012 7:e35241
• IA Morocz, F Janoos, P van Gelderen, D Manor, A Karni, Z Breznitz, M von Aster, T Kushnir, R Shalev
  Time-Resolved and Spatio-Temporal Analysis of Complex Cognitive Processes and their Role in Disorders like Developmental Dyscalculia.
  Int J Imaging Syst Technol 2012 22:81-96
• P van Gelderen, JH Duyn, NF Ramsey, G Liu, CT Moonen
  The PRESTO technique for fMRI.
  Neuroimage 2012 62:676-81
• Q Duan, P van Gelderen, J Duyn
  Tailored excitation using nonlinear B0-shims.
  Magn Reson Med 2012 67:601-8
• B Yao, F Bagnato, E Matsuura, H Merkle, P van Gelderen, FK Cantor, JH Duyn
  Chronic multiple sclerosis lesions: characterization with high-field-strength MR imaging.
  Radiology 2012 262:206-15
• JH Duyn
  The future of ultra-high field MRI and fMRI for study of the human brain.
  Neuroimage 2012 62:1241-8
• J Lee, K Shmueli, BT Kang, B Yao, M Fukunaga, P van Gelderen, S Palumbo, F Bosetti, AC Silva, JH Duyn
  The contribution of myelin to magnetic susceptibility-weighted contrasts in high-field MRI of the brain.
  Neuroimage 2012 59:3967-75
• Z Liu, JA de Zwart, P van Gelderen, LW Kuo, JH Duyn
  Statistical feature extraction for artifact removal from concurrent fMRI-EEG recordings.
  Neuroimage 2012 59:2073-87
• P Sati, AC Silva, P van Gelderen, MI Gaitan, JE Wohler, S Jacobson, JH Duyn, DS Reich
  In vivo quantification of T(2) anisotropy in white matter fibers in marmoset monkeys.
  Neuroimage 2012 59:979-85
• P van Gelderen, JA de Zwart, J Lee, P Sati, DS Reich, JH Duyn
  Nonexponential T(2) decay in white matter.
  Magn Reson Med 2012 67:110-7

2011

• Z Liu, JA de Zwart, P van Gelderen, LW Kuo, JH Duyn
  Statistical feature extraction for artifact removal from concurrent fMRI-EEG recordings.
  Neuroimage 2011 59:2073-87
• M Freed, JA de Zwart, P Hariharan, M R Myers, A Badano
  Development and characterization of a dynamic lesion phantom for the quantitative evaluation of dynamic contrast-enhanced MRI.
  Med Phys 2011 38:5601
• F Bagnato, VN Ikonomidou, P van Gelderen, S Auh, J Hanafy, FK Cantor, J Ohayon, N Richert, J Duyn
  Lesions by tissue specific imaging characterize multiple sclerosis patients with more advanced disease.
  Mult Scler 2011 17:1424-31
• JH Duyn, AP Koretsky
  Novel frontiers in ultra-structural and molecular MRI of the brain.
  Curr Opin Neurol 2011 24:386-93
• J Lee, P van Gelderen, LW Kuo, H Merkle, AC Silva, JH Duyn
  T2*-based fiber orientation mapping.
  Neuroimage 2011 57:225-34
• S Wang, JA de Zwart, JH Duyn
  A fast integral equation method for simulating high-field radio frequencycoil arrays in magnetic resonance imaging.
  Phys Med Biol 2011 56:2779-89
• M Freed, JA de Zwart, JT Loud, RH El Khouli, KJ Myers, MH Greene, JH Duyn, A Badano
  An anthropomorphic phantom for quantitative evaluation of breast MRI.
  Med Phys 2011 38:743-53
• H Merkle, J Murphy-Boesch, P van Gelderen, S Wang, TQ Li, AP Koretsky, JH Duyn
  Transmit B1-field correction at 7 T using actively tuned coupled inner elements.
  Magn Reson Med 2011 66:901-10
• JH Duyn
  High-field MRI of brain iron.
  Methods Mol Biol 2011 711:239-49
• D Picchioni, SG Horovitz, M Fukunaga, WS Carr, JA Meltzer, TJ Balkin, JH Duyn, AR Braun
  Infraslow EEG oscillations organize large-scale cortical-subcortical interactions during sleep: a combined EEG/fMRI study.
  Brain Res 2011 1374:63-72
• J Lee, M Fukunaga, JH Duyn
  Improving contrast to noise ratio of resonance frequency contrast images (phase images) using balanced steady-state free precession.
  Neuroimage 2011 54:2779-88
• MG Bright, MJ Donahue, JH Duyn, P Jezzard, DP Bulte
  The effect of basal vasodilation on hypercapnic and hypocapnic reactivity measured using magnetic resonance imaging.
  J Cereb Blood Flow Metab 2011 31:426-38
• K Shmueli, SJ Dodd, TQ Li, JH Duyn
  The contribution of chemical exchange to MRI frequency shifts in brain tissue.
  Magn Reson Med 2011 65:35-43
• M Bianciardi, M Fukunaga, P van Gelderen, JA de Zwart, JH Duyn
  Negative BOLD-fMRI signals in large cerebral veins.
  J Cereb Blood Flow Metab 2011 31:401-12
• D Picchioni, SG Horovitz, M Fukunaga, WS Carr, JA Meltzer, TJ Balkin, JH Duyn, AR Braun
  Infraslow EEG oscillations organize large-scale cortical-subcortical interactions during sleep: a combined EEG/fMRI study.
  Brain Res 2011 1374:63-72
• J Lee, M Fukunaga, JH Duyn
  Improving contrast to noise ratio of resonance frequency contrast images (phase images) using balanced steady-state free precession.
  Neuroimage 2011 54:2779-88
• MG Bright, MJ Donahue, JH Duyn, P Jezzard, DP Bulte
  The effect of basal vasodilation on hypercapnic and hypocapnic reactivity measured using magnetic resonance imaging.
  J Cereb Blood Flow Metab 2011 31:426-38
• M Bianciardi, M Fukunaga, P van Gelderen, JA de Zwart, JH Duyn
  Negative BOLD-fMRI signals in large cerebral veins.
  J Cereb Blood Flow Metab 2011 31:401-12

2010

• SM Wang, JH Duyn
  A topology-based multilevel scheme for fast integral-equation methods.
  Microwave and Optical Techn 2010 52:2195-2198
• ML Scholvinck, A Maier, FQ Ye, JH Duyn, DA Leopold
  Neural basis of global resting-state fMRI activity.
  Proc Natl Acad Sci U S A 2010 107:10238-43
• JH Duyn
  Study of brain anatomy with high-field MRI: recent progress.
  Magn Reson Imaging 2010 28:1210-5
• J Lee, K Shmueli, M Fukunaga, P van Gelderen, H Merkle, AC Silva, JH Duyn
  Sensitivity of MRI resonance frequency to the orientation of brain tissue microstructure.
  Proc Natl Acad Sci U S A 2010 107:5130-5
• M Fukunaga, TQ Li, P van Gelderen, JA de Zwart, K Shmueli, B Yao, J Lee, D Maric, MA Aronova, G Zhang, RD Leapman, JF Schenck, H Merkle, JH Duyn
  Layer-specific variation of iron content in cerebral cortex as a source of MRI contrast.
  Proc Natl Acad Sci U S A 2010 107:3834-9
• Z Liu, M Fukunaga, JA de Zwart, JH Duyn
  Large-scale spontaneous fluctuations and correlations in brain electrical activity observed with magnetoencephalography.
  Neuroimage 2010 51:102-11
• J Lee, Y Hirano, M Fukunaga, AC Silva, JH Duyn
  On the contribution of deoxy-hemoglobin to MRI gray-white matter phase contrast at high field.
  Neuroimage 2010 49:193-8

2009

• K Shmueli, JA de Zwart, P van Gelderen, TQ Li, SJ Dodd, JH Duyn
  Magnetic susceptibility mapping of brain tissue in vivo using MRI phase data.
  Magn Reson Med 2009 62:1510-22
• SG Horovitz, AR Braun, WS Carr, D Picchioni, TJ Balkin, M Fukunaga, JH Duyn
  Decoupling of the brain's default mode network during deep sleep.
  Proc Natl Acad Sci U S A 2009 106:11376-81
• L Qin, P van Gelderen, JA Derbyshire, F Jin, J Lee, JA de Zwart, Y Tao, JH Duyn
  Prospective head-movement correction for high-resolution MRI using an in-bore optical tracking system.
  Magn Reson Med 2009 62:924-34
• JA de Zwart, P van Gelderen, JM Jansma, M Fukunaga, M Bianciardi, JH Duyn
  Hemodynamic nonlinearities affect BOLD fMRI response timing and amplitude.
  Neuroimage 2009 47:1649-58
• MG Bright, DP Bulte, P Jezzard, JH Duyn
  Characterization of regional heterogeneity in cerebrovascular reactivity dynamics using novel hypocapnia task and BOLD fMRI.
  Neuroimage 2009 48:166-75
• M Riva, VN Ikonomidou, JJ Ostuni, P van Gelderen, S Auh, JM Ohayon, F Tovar-Moll, ND Richert, JH Duyn, F Bagnato
  Tissue-specific imaging is a robust methodology to differentiate in vivo T1 black holes with advanced multiple sclerosis-induced damage.
  AJNR Am J Neuroradiol 2009 30:1394-401
• M Bianciardi, M Fukunaga, P van Gelderen, SG Horovitz, JA de Zwart, K Shmueli, JH Duyn
  Sources of functional magnetic resonance imaging signal fluctuations in the human brain at rest: a 7 T study.
  Magn Reson Imaging 2009 27:1019-29
• S Wang, J Murphy-Boesch, H Merkle, AP Koretsky, JH Duyn
  B1 homogenization in MRI by multilayer coupled coils.
  IEEE Trans Med Imaging 2009 28:551-4
• S Wang, JH Duyn
  Three-dimensional automatic mesh generation for hybrid electromagnetic simulations.
  IEEE Antenn Propag M 2009 51:71-85
• M Bianciardi, M Fukunaga, P van Gelderen, SG Horovitz, JA de Zwart, JH Duyn
  Modulation of spontaneous fMRI activity in human visual cortex by behavioral
  Neuroimage 2009 45:160-8
• B Yao, TQ Li, P Gelderen, K Shmueli, JA de Zwart, JH Duyn
  Susceptibility contrast in high field MRI of human brain as a function oftissue iron content.
  Neuroimage 2009 44:1259-66
• M Bianciardi, P van Gelderen, JH Duyn, M Fukunaga, JA de Zwart
  Making the most of fMRI at 7 T by suppressing spontaneous signal fluctuations.
  Neuroimage 2009 44:448-54
• F Bagnato, B Yao, F Cantor, H Merkle, E Condon, M Montequin, S Moore, M Quezado, D Tkaczyk, H McFarland
  Multisequence-imaging protocols to detect cortical lesions of patients with multiple sclerosis: observations from a post-mortem 3 Tesla imaging study.
  J Neurol Sci 2009 282:80-5
• M Papoutsi, JA de Zwart, JM Jansma, MJ Pickering, JA Bednar, B Horwitz
  From Phonemes to Articulatory Codes: An fMRI Study of the Role of Broca's Area in Speech Production.
  Cereb Cortex 2009

2008

• PJ Drew, JH Duyn, E Golanov, D Kleinfeld
  Finding coherence in spontaneous oscillations.
  Nat Neurosci 2008 11:991-3
• D Picchioni, M Fukunaga, WS Carr, AR Braun, TJ Balkin, JH Duyn, SG Horovitz
  fMRI differences between early and late stage-1 sleep.
  Neurosci Lett 2008 441:81-5
• S Wang, JH Duyn
  Time-domain finite-difference/finite-element hybrid simulations of radio frequency coils in magnetic resonance imaging.
  Phys Med Biol 2008 53:2677-92
• JA de Zwart, P Gelderen, M Fukunaga, JH Duyn
  Reducing correlated noise in fMRI data.
  Magn Reson Med 2008 59:939-45
• P van Gelderen, JA de Zwart, JH Duyn
  Pittfalls of MRI measurement of white matter perfusion based on arterial spin labeling.
  Magn Reson Med 2008 59:788-95
• M Fukunaga, SG Horovitz, JA de Zwart, P van Gelderen, TJ Balkin, AR Braun, JH Duyn
  Metabolic origin of BOLD signal fluctuations in the absence of stimuli.
  J Cereb Blood Flow Metab 2008 28:1377-87
• KH Chuang, P van Gelderen, H Merkle, J Bodurka, VN Ikonomidou, AP Koretsky, JH Duyn, SL Talagala
  Mapping resting-state functional connectivity using perfusion
  Neuroimage 2008 40:1595-605
• SG Horovitz, M Fukunaga, JA de Zwart, P van Gelderen, SC Fulton, TJ Balkin, JH Duyn
  Low frequency BOLD fluctuations during resting wakefulness and light sleep: a simultaneous EEG-fMRI study.
  Hum Brain Mapp 2008 29:671-82

2007

• I Mukai, D Kim, M Fukunaga, S Japee, S Marrett, LG Ungerleider
  Activations in visual and attention-related areas predict and correlate with the degree of perceptual learning.
  J Neurosci 2007 27:11401-11
• K Shmueli, P van Gelderen, JA de Zwart, SG Horovitz, M Fukunaga, JM Jansma, JH Duyn
  Low-frequency fluctuations in the cardiac rate as a source of variance in the resting-state fMRI BOLD signal.
  Neuroimage 2007 38:306-20
• JH Duyn, P van Gelderen, TQ Li, JA de Zwart, AP Koretsky, M Fukunaga
  High-field MRI of brain cortical substructure based on signal
  Proc Natl Acad Sci U S A 2007 104:11796-801
• AC Silva, AP Koretsky, JH Duyn
  Functional MRI impulse response for BOLD and CBV contrast in rat somatosensory cortex.
  Magn Reson Med 2007 57:1110-8
• P van Gelderen, JA de Zwart, P Starewicz, RS Hinks, JH Duyn
  Real-time shimming to compensate for respiration-induced B0 fluctuations.
  Magn Reson Med 2007 57:362-8
• JM Jansma, NF Ramsey, JA de Zwart, P van Gelderen, JH Duyn
  fMRI study of effort and information processing in a working memory task.
  Hum Brain Mapp 2007 28:431-40

2006

• RH Deckers, P van Gelderen, M Ries, O Barret, JH Duyn, VN Ikonomidou, M Fukunaga, GH Glover, JA de Zwart
  An adaptive filter for suppression of cardiac and respiratory noise in MRI time series data.
  Neuroimage 2006 33:1072-1081
• M Fukunaga, SG Horovitz, P van Gelderen, JA de Zwart, JM Jansma, VN Ikonomidou, R Chu, RH Deckers, DA Leopold, JH Duyn
  Large-amplitude, spatially correlated fluctuations in BOLD fMRI signals during extended rest and early sleep stages.
  Magn Reson Imaging 2006 24:979-92
• TQ Li, P van Gelderen, H Merkle, L Talagala, AP Koretsky, J Duyn
  Extensive heterogeneity in white matter intensity in high-resolution T2*-weighted MRI of the human brain at 7.0 T.
  Neuroimage 2006 32:1032-40
• PS Bellgowan, PA Bandettini, P van Gelderen, A Martin, J Bodurka
  Improved BOLD detection in the medial temporal region using parallel imaging and voxel volume reduction.
  Neuroimage 2006 29:1244-1251
• S Wang, JH Duyn
  Analysing radio-frequency coil arrays in high-field magnetic resonance imaging by the combined field integral equation method.
  Phys Med Biol 2006 51:3211-29
• SM Wang, JH Duyn
  A split-field iterative ADI method for simulating transverse-magnetic waves in lossy media.
  IEEE Trans Microwave Theory Techniques 2006 54:2196-202
• JA de Zwart, P van Gelderen, X Golay, VN Ikonomidou, JH Duyn
  Accelerated parallel imaging for functional imaging of the human brain.
  NMR Biomed 2006 19:342-51

2005

• JH Duyn, P van Gelderen, L Talagala, A Koretsky, JA de Zwart
  Technological advances in MRI measurement of brain perfusion.
  J Magn Reson Imaging 2005 22:751-753
• CW Wu, P van Gelderen, T Hanakawa, Z Yaseen, LG Cohen
  Enduring representational plasticity after somatosensory stimulation.
  Neuroimage 2005 27:872-884
• P van Gelderen, CW Wu, JA de Zwart, L Cohen, M Hallett, JH Duyn
  Resolution and reproducibility of BOLD and perfusion functional MRI at 3.0 Tesla.
  Magn Reson Med 2005 54:569-576
• VN Ikonomidou, P van Gelderen, JA de Zwart, M Fukunaga, JH Duyn
  Optimizing brain tissue contrast with EPI: a simulated annealing approach.
  Magn Reson Med 2005 54:373-85
• JA de Zwart, AC Silva, P van Gelderen, P Kellman, M Fukunaga, R Chu, AP Koretsky, JA Frank, JH Duyn
  Temporal dynamics of the BOLD fMRI impulse response.
  Neuroimage 2005 24:667-677

2004

• MS Beauchamp, BD Argall, J Bodurka, JH Duyn, A Martin
  Unraveling multisensory integration: patchy organization within human STS multisensory cortex.
  Nat Neurosci 2004 7:1190-2
• R Chu, JA de Zwart, P van Gelderen, M Fukunaga, P Kellman, T Holroyd, JH Duyn
  Hunting for neuronal currents: absence of rapid MRI signal changes during visual-evoked response.
  Neuroimage 2004 23:1059-67
• X Golay, JA de Zwart, YC Ho, YY Sitoh
  Parallel imaging techniques in functional MRI.
  Top Magn Reson Imaging 2004 15:255-65
• J Duyn
  Specificity of high-resolution BOLD and CBF fMRI at 7 T.
  Magn Reson Med 2004 51:644-5; author reply 646-7
• A Ahmad, R Momenan, P van Gelderen, T Moriguchi, RS Greiner, Jr Salem N
  Gray and white matter brain volume in aged rats raised on n-3 fatty acid deficient diets.
  Nutr Neurosci 2004 7:13-20
• F Fera, MN Yongbi, P van Gelderen, JA Frank, VS Mattay, JH Duyn
  EPI-BOLD fMRI of human motor cortex at 1.5 T and 3.0 T: sensitivity dependence on echo time and acquisition bandwidth.
  J Magn Reson Imaging 2004 19:19-26
• J Bodurka, PJ Ledden, P van Gelderen, R Chu, JA de Zwart, D Morris, JH Duyn
  Scalable multichannel MRI data acquisition system.
  Magn Reson Med 2004 51:165-71
• JA de Zwart, PJ Ledden, P van Gelderen, J Bodurka, R Chu, JH Duyn
  Signal-to-noise ratio and parallel imaging performance of a 16-channel receive-only brain coil array at 3.0 Tesla.
  Magn Reson Med 2004 51:22-6

2003

• M Klarhofer, B Dilharreguy, P van Gelderen, CT Moonen
  A PRESTO-SENSE sequence with alternating partial-Fourier encoding for rapid susceptibility-weighted 3D MRI time series.
  Magn Reson Med 2003 50:830-8
• P Kellman, P Gelderen, JA de Zwart, JH Duyn
  Method for functional MRI mapping of nonlinear response.
  Neuroimage 2003 19:190-9
• T Hanakawa, I Immisch, K Toma, MA Dimyan, P Van Gelderen, M Hallett
  Functional properties of brain areas associated with motor execution and imagery.
  J Neurophysiol 2003 89:989-1002

2002

• JA de Zwart, P van Gelderen, P Kellman, JH Duyn
  Application of sensitivity-encoded echo-planar imaging for blood oxygen level-dependent functional brain imaging.
  Magn Reson Med 2002 48:1011-20
• EL Barbier, S Marrett, A Danek, A Vortmeyer, P van Gelderen, J Duyn, P Bandettini, J Grafman, AP Koretsky
  Imaging cortical anatomy by high-resolution MR at 3.0T: detection of the stripe of Gennari in visual area 17.
  Magn Reson Med 2002 48:735-8
• A Bertolino, JL Roffman, BK Lipska, P van Gelderen, A Olson, DR Weinberger
  Reduced N-acetylaspartate in prefrontal cortex of adult rats with neonatal hippocampal damage.
  Cereb Cortex 2002 12:983-90
• JW Bulte, T Douglas, B Witwer, SC Zhang, BK Lewis, P van Gelderen, H Zywicke, ID Duncan, JA Frank
  Monitoring stem cell therapy in vivo using magnetodendrimers as a new class of cellular MR contrast agents.
  Acad Radiol 2002 9 Suppl 2:S332-5
• JA de Zwart, P van Gelderen, P Kellman, JH Duyn
  Reduction of gradient acoustic noise in MRI using SENSE-EPI.
  Neuroimage 2002 16:1151-5
• FJ Langheim, JH Callicott, VS Mattay, JH Duyn, DR Weinberger
  Cortical systems associated with covert music rehearsal.
  Neuroimage 2002 16:901-8
• HA Zywicke, P van Gelderen, JR Connor, JR Burdo, MD Garrick, KG Dolan, JA Frank, JW Bulte
  Microscopic R2* mapping of reduced brain iron in the Belgrade rat.
  Ann Neurol 2002 52:102-5
• JA de Zwart, PJ Ledden, P Kellman, P van Gelderen, JH Duyn
  Design of a SENSE-optimized high-sensitivity MRI receive coil for brain imaging.
  Magn Reson Med 2002 47:1218-27
• JW Bulte, SC Zhang, P van Gelderen, V Herynek, EK Jordan, CH Janssen, ID Duncan, JA Frank
  Magnetically labeled glial cells as cellular MR contrast agents.
  Acad Radiol 2002 9 Suppl 1:S148-50
• MN Yongbi, F Fera, Y Yang, JA Frank, JH Duyn
  Pulsed arterial spin labeling: comparison of multisection baseline and functional MR imaging perfusion signal at 1.5 and 3.0 T: initial results in six subjects.
  Radiology 2002 222:569-75
• G Tedeschi, S Bonavita, HF McFarland, N Richert, JH Duyn, JA Frank
  Proton MR spectroscopic imaging in multiple sclerosis.
  Neuroradiology 2002 44:37-42

2001

• JW Bulte, T Douglas, B Witwer, SC Zhang, E Strable, BK Lewis, H Zywicke, B Miller, P van Gelderen, BM Moskowitz, ID Duncan, JA Frank
  Magnetodendrimers allow endosomal magnetic labeling and in vivo tracking of stem cells.
  Nat Biotechnol 2001 19:1141-7
• MN Yongbi, F Fera, VS Mattay, JA Frank, JH Duyn
  Simultaneous BOLD/perfusion measurement using dual-echo FAIR and UNFAIR: sequence comparison at 1.5T and 3.0T.
  Magn Reson Imaging 2001 19:1159-65
• N Goffeney, JW Bulte, J Duyn, Jr Bryant LH, PC van Zijl
  Sensitive NMR detection of cationic-polymer-based gene delivery systems using saturation transfer via proton exchange.
  J Am Chem Soc 2001 123:8628-9
• I Immisch, D Waldvogel, P van Gelderen, M Hallett
  The role of the medial wall and its anatomical variations for bimanual antiphase and in-phase movements.
  Neuroimage 2001 14:674-84
• JH Duyn, CX Tan, P van Gelderen, MN Yongbi
  High-sensitivity single-shot perfusion-weighted fMRI.
  Magn Reson Med 2001 46:88-94

2000

• D Waldvogel, P van Gelderen, I Immisch, C Pfeiffer, M Hallett
  The variability of serial fMRI data: correlation between a visual and a motor task.
  Neuroreport 2000 11:3843-7
• JH Callicott, A Bertolino, VS Mattay, FJ Langheim, J Duyn, R Coppola, TE Goldberg, DR Weinberger
  Physiological dysfunction of the dorsolateral prefrontal cortex in schizophrenia revisited.
  Cereb Cortex 2000 10:1078-92
• JW van Der Veen, DR Weinberger, G Tedeschi, JA Frank, JH Duyn
  Proton MR spectroscopic imaging without water suppression.
  Radiology 2000 217:296-300
• FQ Ye, KF Berman, T Ellmore, G Esposito, JD van Horn, Y Yang, J Duyn, AM Smith, JA Frank, DR Weinberger, AC McLaughlin
  H(2)(15)O PET validation of steady-state arterial spin tagging cerebral blood flow measurements in humans.
  Magn Reson Med 2000 44:450-6
• D Waldvogel, P van Gelderen, W Muellbacher, U Ziemann, I Immisch, M Hallett
  The relative metabolic demand of inhibition and excitation.
  Nature 2000 406:995-8
• P van Gelderen, C Grandin, JR Petrella, CT Moonen
  Rapid three-dimensional MR imaging method for tracking a bolus of contrast agent through the brain.
  Radiology 2000 216:603-8
• JH Duyn
  High-speed interlaced spin-echo magnetic resonance imaging.
  Magn Reson Med 2000 43:905-8
• MN Yongbi, CX Tan, JA Frank, JH Duyn
  A protocol for assessing subtraction errors of arterial spin-tagging perfusion techniques in human brain.
  Magn Reson Med 2000 43:896-900
• JL Roffman, BK Lipska, A Bertolino, P Van Gelderen, AW Olson, ZZ Khaing, DR Weinberger
  Local and downstream effects of excitotoxic lesions in the rat medial prefrontal cortex on In vivo 1H-MRS signals.
  Neuropsychopharmacology 2000 22:430-9
• KE Warren, JA Frank, JL Black, RS Hill, JH Duyn, AA Aikin, BK Lewis, PC Adamson, FM Balis
  Proton magnetic resonance spectroscopic imaging in children with recurrent primary brain tumors.
  J Clin Oncol 2000 18:1020-6
• W Huang, Z Galdzicki, P van Gelderen, A Balbo, EG Chikhale, MB Schapiro, SI Rapoport
  Brain myo-inositol level is elevated in Ts65Dn mouse and reduced after lithium treatment.
  Neuroreport 2000 11:445-8